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https://github.com/sgibb/maldiquantforeign

Import/Export routines for MALDIquant
https://github.com/sgibb/maldiquantforeign

csv export import maldi mass-spectrometry msd-files mzml r

Last synced: about 2 months ago
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Import/Export routines for MALDIquant

Host: GitHub
URL: https://github.com/sgibb/maldiquantforeign
Owner: sgibb
Created: 2012-12-08T16:15:16.000Z (about 12 years ago)
Default Branch: master
Last Pushed: 2024-01-22T21:01:24.000Z (11 months ago)
Last Synced: 2024-06-11T20:18:32.231Z (6 months ago)
Topics: csv, export, import, maldi, mass-spectrometry, msd-files, mzml, r
Language: R
Homepage: https://strimmerlab.github.io/software/maldiquant/
Size: 402 KB
Stars: 9
Watchers: 7
Forks: 4
Open Issues: 2
Metadata Files:
- Readme: README.md

Awesome Lists containing this project

README

        # MALDIquantForeign

[![Project Status: Active - The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)

[![R-CMD-check](https://github.com/sgibb/MALDIquantForeign/workflows/R-CMD-check/badge.svg)](https://github.com/sgibb/MALDIquantForeign/actions)

[![codecov.io](https://codecov.io/github/sgibb/MALDIquantForeign/coverage.svg?branch=master)](https://codecov.io/github/sgibb/MALDIquantForeign?branch=master)

[![license](https://img.shields.io/badge/license-GPL%20%28%3E=%203%29-brightgreen.svg?style=flat)](https://www.gnu.org/licenses/gpl-3.0.html)

[![cran checks](https://cranchecks.info/badges/worst/MALDIquantForeign)](https://cran.r-project.org/web/checks/check_results_MALDIquantForeign.html)

[![metacran version](https://www.r-pkg.org/badges/version/MALDIquantForeign)](https://cran.r-project.org/web/packages/MALDIquantForeign/index.html)

[![metacran downloads](https://cranlogs.r-pkg.org/badges/MALDIquantForeign?color=brightgreen)](https://cran.r-project.org/web/packages/MALDIquantForeign/index.html)

## Description

Import/Export routines for [MALDIquant](https://strimmerlab.github.io/software/maldiquant/)

[MALDIquantForeign on

CRAN](https://cran.r-project.org/web/packages/MALDIquantForeign/index.html)

## Install

```s

install.packages("MALDIquantForeign")

```

## Import

- tab, txt, csv

- Bruker Daltonics *flex series files

- Ciphergen XML files

- [mzXML](https://tools.proteomecenter.org/wiki/index.php?title=Formats:mzXML)

- [mzML](https://psidev.info/mzml_1_0_0%20)

- [imzML](https://imzml.org)

- [Analyze 7.5](https://www.grahamwideman.com/gw/brain/analyze/formatdoc.htm)

- CDF (via the [RNetCDF](https://cran.r-project.org/web/packages/RNetCDF/index.html) package)

- [mMass](http://mmass.org) msd files

## Export

- tab, csv

- [mMass](http://mmass.org) msd files

- [mzML](https://psidev.info/mzml_1_0_0%20)

- [imzML](https://imzml.org)