https://github.com/sgibb/topdownr

R-package for the analysis of Thermo Orbitrap Fusion Top-Down Proteomic Data.
https://github.com/sgibb/topdownr

mass-spectrometry proteomics r topdown

Last synced: 2 months ago
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R-package for the analysis of Thermo Orbitrap Fusion Top-Down Proteomic Data.

• Host: GitHub
• URL: https://github.com/sgibb/topdownr
• Owner: sgibb
• License: gpl-3.0
• Created: 2016-04-13T18:04:34.000Z (about 9 years ago)
• Default Branch: master
• Last Pushed: 2024-01-13T21:45:02.000Z (over 1 year ago)
• Last Synced: 2025-03-17T01:21:26.140Z (2 months ago)
• Topics: mass-spectrometry, proteomics, r, topdown
• Language: R
• Homepage: https://sgibb.github.io/topdownr/
• Size: 10.6 MB
• Stars: 1
• Watchers: 4
• Forks: 0
• Open Issues: 14
• Metadata Files:
  • Readme: README.md
  • Contributing: CONTRIBUTING.md
  • License: LICENSE

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README

        
# topdownr

[![Project Status: Active - The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)

[![build status](https://github.com/sgibb/topdownr/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/sgibb/topdownr/actions)

[![codecov.io](https://img.shields.io/codecov/c/github/sgibb/topdownr.svg?branch=master)](https://codecov.io/github/sgibb/topdownr/?branch=master)

[![license](https://img.shields.io/badge/license-GPL%20%28%3E=%203%29-brightgreen.svg?style=flat)](https://www.gnu.org/licenses/gpl-3.0.html)

[![years in bioc](https://bioconductor.org/shields/years-in-bioc/topdownr.svg)](https://bioconductor.org/packages/release/bioc/html/topdownr.html)

[![bioc downloads](https://bioconductor.org/shields/downloads/topdownr.svg)](https://bioconductor.org/packages/stats/bioc/topdownr/)

Release: [![build release](https://bioconductor.org/shields/build/release/bioc/topdownr.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/topdownr/)

Devel: [![build devel](https://bioconductor.org/shields/build/devel/bioc/topdownr.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/topdownr/)

## Installation

```r

if (!require("BiocManager"))

    install.packages("BiocManager")

BiocManager::install("topdownr")

```

If you want to install the development version from github

(not recommended unless you know what you are doing):

```r

if (!require("BiocManager"))

    install.packages("BiocManager")

BiocManager::install("sgibb/topdownr")

```

## Documentation

To get started:

```r

?"topdownr-package"

vignette("data-generation", package="topdownr")

vignette("analysis", package="topdownr")

```

Development documentation: https://sgibb.github.io/topdownr/

## Questions

General questions should be asked on

the [Bioconductor support forum](https://support.bioconductor.org/),

using `topdownr` to tag the question. Feel also free to open a

GitHub [issue](https://github.com/sgibb/topdownr/issues), in

particular for bug reports.

## Contribution

See [CONTRIBUTING.md](CONTRIBUTING.md).

## Support

See [SUPPORT.md](SUPPORT.md).