https://github.com/shehanmunasinghe/ecg12lead

An extension of https://github.com/shehanmunasinghe/diagno
https://github.com/shehanmunasinghe/ecg12lead

Last synced: about 1 year ago
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An extension of https://github.com/shehanmunasinghe/diagno

• Host: GitHub
• URL: https://github.com/shehanmunasinghe/ecg12lead
• Owner: shehanmunasinghe
• Created: 2020-12-07T02:24:34.000Z (over 5 years ago)
• Default Branch: main
• Last Pushed: 2020-12-20T14:57:02.000Z (over 5 years ago)
• Last Synced: 2025-03-15T10:11:23.672Z (over 1 year ago)
• Language: Python
• Size: 31.3 KB
• Stars: 2
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

          
# ecg12lead

Experiments on the **PhysioNet/CinC 2020 Challenge 12-lead ECG Classification  Dataset**.

## How to run

    git clone https://github.com/shehanmunasinghe/ecg12lead

    cd ecg12lead

    # install project 

    pip install -e .

    pip install -r requirements.txt

## Imports

This project is setup as a package which means any file can be imported into any other file like so:

    from ecg12lead.datasets import PhysioNet2020Dataset

## Downloading Data

### Download Links

   

* [CPSC](https://storage.cloud.google.com/physionet-challenge-2020-12-lead-ecg-public/PhysioNetChallenge2020_Training_CPSC.tar.gz )

* [CPSC-Extra](https://storage.cloud.google.com/physionet-challenge-2020-12-lead-ecg-public/PhysioNetChallenge2020_Training_2.tar.gz)

* [StPetersburg](https://storage.cloud.google.com/physionet-challenge-2020-12-lead-ecg-public/PhysioNetChallenge2020_Training_StPetersburg.tar.gz)

* [PTB](https://storage.cloud.google.com/physionet-challenge-2020-12-lead-ecg-public/PhysioNetChallenge2020_Training_PTB.tar.gz)

* [PTB-XL](https://storage.cloud.google.com/physionet-challenge-2020-12-lead-ecg-public/PhysioNetChallenge2020_PTB-XL.tar.gz)

* [Georgia](https://storage.cloud.google.com/physionet-challenge-2020-12-lead-ecg-public/PhysioNetChallenge2020_Training_E.tar.gz)

### When using Colab

    DATASETS_DIR = '/content/Data'

    !mkdir "{DATASETS_DIR}"

    !cd "{DATASETS_DIR}"

    # Authentication

    from google.colab import auth

    auth.authenticate_user()

    # List avaialble datasets

    !gsutil ls "gs://physionet-challenge-2020-12-lead-ecg-public/"  

    # CPSC

    !gsutil cp "gs://physionet-challenge-2020-12-lead-ecg-public/PhysioNetChallenge2020_Training_CPSC.tar.gz"           . 

    !tar -xzf PhysioNetChallenge2020_Training_CPSC.tar.gz

    !rm PhysioNetChallenge2020_Training_CPSC.tar.gz

    !mv Training_WFDB CPSC

    # CPSC-Extra

    !gsutil cp "gs://physionet-challenge-2020-12-lead-ecg-public/PhysioNetChallenge2020_Training_2.tar.gz"              . 

    !tar -xzf PhysioNetChallenge2020_Training_2.tar.gz

    !rm PhysioNetChallenge2020_Training_2.tar.gz

    !mv Training_2 CPSC-Extra

    # StPetersburg

    !gsutil cp "gs://physionet-challenge-2020-12-lead-ecg-public/PhysioNetChallenge2020_Training_StPetersburg.tar.gz"   . 

    !tar -xzf PhysioNetChallenge2020_Training_StPetersburg.tar.gz

    !rm PhysioNetChallenge2020_Training_StPetersburg.tar.gz

    !mv WFDB StPetersburg

    # PTB

    !gsutil cp "gs://physionet-challenge-2020-12-lead-ecg-public/PhysioNetChallenge2020_Training_PTB.tar.gz"            . 

    !tar -xzf PhysioNetChallenge2020_Training_PTB.tar.gz

    !rm PhysioNetChallenge2020_Training_PTB.tar.gz

    !mv WFDB PTB

    # PTB-XL

    !gsutil cp "gs://physionet-challenge-2020-12-lead-ecg-public/PhysioNetChallenge2020_Training_PTB-XL.tar.gz"    . 

    !tar -xzf PhysioNetChallenge2020_Training_PTB-XL.tar.gz

    !rm PhysioNetChallenge2020_Training_PTB-XL.tar.gz

    !mv WFDB PTB-XL

    # Georgia

    !gsutil cp "gs://physionet-challenge-2020-12-lead-ecg-public/PhysioNetChallenge2020_Training_E.tar.gz"              . 

    !tar -xzf PhysioNetChallenge2020_Training_E.tar.gz

    !rm PhysioNetChallenge2020_Training_E.tar.gz

    !mv WFDB Georgia