https://github.com/shenwei356/bio_scripts

Practical, reusable scripts for bioinformatics
https://github.com/shenwei356/bio_scripts

bioinformatics perl python reusable script

Last synced: 3 months ago
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Practical, reusable scripts for bioinformatics

• Host: GitHub
• URL: https://github.com/shenwei356/bio_scripts
• Owner: shenwei356
• License: mit
• Created: 2013-10-17T12:40:39.000Z (about 11 years ago)
• Default Branch: master
• Last Pushed: 2019-02-12T13:21:47.000Z (over 5 years ago)
• Last Synced: 2024-06-14T01:42:53.814Z (5 months ago)
• Topics: bioinformatics, perl, python, reusable, script
• Language: Perl
• Homepage:
• Size: 9.56 MB
• Stars: 96
• Watchers: 17
• Forks: 65
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
Bio_scripts

========

Practical, reusable scripts for bioinformatics .

    sequence        tools for FASTA/Q files: fasta2tab, tab2fasta,

                    fasta_extract_by_pattern, fasta_common_seqs,

                    fasta_locate_motif, fasta_remove_duplicates,

                    fastx_translate, fasta_gc_skew.plot ...

    util            moved to https://github.com/shenwei356/datakit

    plot            plot scripts: heatmap ...

    blast           NCBI BLAST+ wrappers

    file_formats    genbank->gtf, bam2gff, gff2fa ...

    enzyme          analysis of restrict enzymes

    protein         Batch compute pI of protein

    biology         get insert from sanger sequencing result

    for_education   scripts with detail comments, for education

    not_used        older version of some scripts

See README in sub derectories.

-------

Copyright (c) 2014-2015, Wei Shen ([email protected])

[MIT License](https://github.com/shenwei356/bio_scripts/blob/master/LICENSE)