https://github.com/shians/glimma

Glimma R package
https://github.com/shians/glimma

interactive-visualizations plot r

Last synced: about 2 months ago
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Glimma R package

• Host: GitHub
• URL: https://github.com/shians/glimma
• Owner: Shians
• License: lgpl-3.0
• Created: 2015-12-22T05:49:22.000Z (about 9 years ago)
• Default Branch: master
• Last Pushed: 2020-04-22T01:11:28.000Z (almost 5 years ago)
• Last Synced: 2023-10-20T23:06:20.827Z (over 1 year ago)
• Topics: interactive-visualizations, plot, r
• Language: R
• Size: 24.1 MB
• Stars: 48
• Watchers: 6
• Forks: 10
• Open Issues: 40
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Awesome Lists containing this project

README

        
Master | Devel 

--- | ---

[![Build Status](https://travis-ci.org/Shians/Glimma.svg?branch=master)](https://travis-ci.org/Shians/Glimma) | [![Build Status](https://travis-ci.org/Shians/Glimma.svg?branch=devel)](https://travis-ci.org/Shians/Glimma) 

[![codecov](https://codecov.io/gh/Shians/Glimma/branch/master/graph/badge.svg)](https://codecov.io/gh/Shians/Glimma) | [![codecov](https://codecov.io/gh/Shians/Glimma/branch/devel/graph/badge.svg)](https://codecov.io/gh/Shians/Glimma)

# PROJECT HAS MOVED

Development of Glimma has been moved to https://github.com/hasaru-k/GlimmaV2

This repository has been archived.

# Glimma

Welcome to Glimma, a R package for creating interactive plots for differential expression analysis.

User suggestions are very welcome, please start an issue for usability improvements or features you'd like to see!

# Installation

### Using BioConductor

This is the recommended method for installing Glimma. The release version can be installed by running the code below:

```r

source("https://bioconductor.org/biocLite.R")

biocLite("Glimma")

```

If a more recent version is required the developmental version:

```r

source("https://bioconductor.org/biocLite.R")

useDevel()

biocLite("Glimma")

```

# Bug reports

If you find bugs please let me know by submitting an issue to this project. If possible please provide a small runnable example demonstrating the bug, operating system and R version.

# Features

## MDS Plots

### Changing dimensions to plots

![bar-click](https://raw.githubusercontent.com/shians/glimma/master/images-doc/MDS-click.gif)

### Changing conditions to colour by

![groups](https://raw.githubusercontent.com/shians/glimma/master/images-doc/MDS-groups.gif)

## MD Plot

### Hovering over points

![points-hover](https://raw.githubusercontent.com/shians/glimma/master/images-doc/point-hover.gif)

### Clicking points

![points-click](https://raw.githubusercontent.com/shians/glimma/master/images-doc/point-click.gif)

### Clicking on table entries

![table-click](https://raw.githubusercontent.com/shians/glimma/master/images-doc/table-search.gif)