https://github.com/shujiahuang/ngslib

A C++ library for reading high-throughput sequencing data.
https://github.com/shujiahuang/ngslib

Last synced: about 2 months ago
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A C++ library for reading high-throughput sequencing data.

• Host: GitHub
• URL: https://github.com/shujiahuang/ngslib
• Owner: ShujiaHuang
• Created: 2021-08-12T08:17:57.000Z (about 4 years ago)
• Default Branch: main
• Last Pushed: 2022-08-12T04:00:26.000Z (about 3 years ago)
• Last Synced: 2025-04-11T01:49:58.822Z (6 months ago)
• Language: C++
• Homepage:
• Size: 415 KB
• Stars: 1
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

          
# NGSlib: A C++ library for reading high-throughtput sequencing data base on htslib.

## Installation

You should install htslib first, before you compile ngslib.

### How to install htslib

1. Download NGSlib from github:

```bash

$ git clone --recursive git@github.com:ShujiaHuang/ngslib.git 

```

> WARNING: Please try several times if fail to clone the data causing by 

> the network problem.

2. Shift to htscodecs directory and run the following commands: 

```bash

$ cd htslib/htscodecs

$ autoreconf -i

$ ./configure

$ make

```

3. Go back to the upper directory and install main htslib by running the commands below:

```bash

$ cd htslib

$ autoreconf -i

$ ./configure

$ make

```