https://github.com/simonlarsen/convaq

An R package for CNV-based association studies
https://github.com/simonlarsen/convaq

Last synced: about 1 month ago
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An R package for CNV-based association studies

• Host: GitHub
• URL: https://github.com/simonlarsen/convaq
• Owner: SimonLarsen
• License: mit
• Created: 2018-03-22T15:00:51.000Z (almost 7 years ago)
• Default Branch: master
• Last Pushed: 2018-06-18T10:05:32.000Z (over 6 years ago)
• Last Synced: 2024-10-21T07:00:07.960Z (2 months ago)
• Language: C++
• Homepage: https://convaq.compbio.sdu.dk
• Size: 96.7 KB
• Stars: 4
• Watchers: 3
• Forks: 0
• Open Issues: 1
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
CoNVaQ

=======

An R package for CNV-based association studies.

CoNVaQ provides two models:

* A standard statistical association model using Fisher's exact test.

* A query-based model, finding CNV regions matching user-specified predicates.

CoNVaQ is also available as an online platform at [https://convaq.compbio.sdu.dk](https://convaq.compbio.sdu.dk).

## Installation

You can install the latest version using devtools with:

```R

devtools::install_github("SimonLarsen/convaq@*release")

```

## License

CoNVaQ is licensed under an MIT license. See the [LICENSE](LICENSE) file for details.

## Citation

If you use CoNVaQ in your research, we kindly ask you to cite the following publication:

> Simon Jonas Larsen, Luisa Matos do Canto, Silvia Regina Rogatto, Jan Baumbach (2018). CoNVaQ: a web tool for copy number variation-based association studies BMC Genomics, 19(1), 369. DOI: https://doi.org/10.1186/s12864-018-4732-8.