https://github.com/simonsfoundation/spatial_transcriptomics_viz
visualization aids for spatial transcriptomics
https://github.com/simonsfoundation/spatial_transcriptomics_viz
Last synced: about 2 months ago
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visualization aids for spatial transcriptomics
- Host: GitHub
- URL: https://github.com/simonsfoundation/spatial_transcriptomics_viz
- Owner: simonsfoundation
- Created: 2017-03-15T18:13:08.000Z (over 9 years ago)
- Default Branch: master
- Last Pushed: 2019-02-19T17:18:45.000Z (over 7 years ago)
- Last Synced: 2025-01-18T21:32:30.802Z (over 1 year ago)
- Language: Python
- Size: 407 KB
- Stars: 2
- Watchers: 6
- Forks: 2
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
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README
# spatial_transcriptomics_viz - visualization aids for spatial transcriptomics
## Setup instructions
You will need a jupyter installation. I recommend
installing anaconda to make everything easier.
```
mkdir ~/.jupyter
mkdir ~/.jupyter/custom
cp custom.css ~/.jupyter/custom
conda create -n ipykernel_py2 python=2 ipykernel
source activate ipykernel_py2
python -m ipykernel install --user
conda install PIL
pip install -r requirements.txt
python setup.py install
jupyter nbextension enable --py --sys-prefix widgetsnbextension
```