https://github.com/sirselim/wes_gene_lists

A curated list of genes used in the filtering steps of exome sequencing pipelines.
https://github.com/sirselim/wes_gene_lists

Last synced: 27 days ago
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A curated list of genes used in the filtering steps of exome sequencing pipelines.

• Host: GitHub
• URL: https://github.com/sirselim/wes_gene_lists
• Owner: sirselim
• Created: 2016-02-18T02:24:59.000Z (almost 9 years ago)
• Default Branch: master
• Last Pushed: 2016-02-18T02:34:05.000Z (almost 9 years ago)
• Last Synced: 2024-10-18T12:22:35.926Z (3 months ago)
• Size: 10.7 KB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# wes_gene_lists

A curated list of genes used in the filtering steps of exome sequencing pipelines.

These pathways gene lists have been extracted from the BROAD GSEA database (http://software.broadinstitute.org/gsea/msigdb/index.jsp)

*extracted on:* ***2016-02-18***

**NOTE:** you will need to register to get access to the GSEA pages

## Ion Transport related

  

  - **ION_TRANSPORT** http://software.broadinstitute.org/gsea/msigdb/cards/ION_TRANSPORT.html

  - **REACTOME_ION_CHANNEL_TRANSPORT** http://software.broadinstitute.org/gsea/msigdb/cards/REACTOME_ION_CHANNEL_TRANSPORT.html

  - **REACTOME_ION_TRANSPORT_BY_P_TYPE_ATPASES** http://software.broadinstitute.org/gsea/msigdb/cards/REACTOME_ION_TRANSPORT_BY_P_TYPE_ATPASES.html

  - **ION_TRANSMEMBRANE_TRANSPORTER_ACTIVITY** http://software.broadinstitute.org/gsea/msigdb/cards/ION_TRANSMEMBRANE_TRANSPORTER_ACTIVITY.html

  - **ION_CHANNEL_ACTIVITY** http://software.broadinstitute.org/gsea/msigdb/cards/ION_CHANNEL_ACTIVITY.html

  - **ION_BINDING** http://software.broadinstitute.org/gsea/msigdb/cards/ION_BINDING.html

## CNS related

  - **CENTRAL_NERVOUS_SYSTEM_DEVELOPMENT** http://software.broadinstitute.org/gsea/msigdb/cards/CENTRAL_NERVOUS_SYSTEM_DEVELOPMENT.html

## Hormone related

  - **HORMONE_SECRETION** http://software.broadinstitute.org/gsea/msigdb/cards/HORMONE_SECRETION.html

  - **HORMONE_METABOLIC_PROCESS** http://software.broadinstitute.org/gsea/msigdb/cards/HORMONE_METABOLIC_PROCESS.html

  - **HORMONE_RECEPTOR_BINDING** http://software.broadinstitute.org/gsea/msigdb/cards/HORMONE_RECEPTOR_BINDING.html

  - **HORMONE_BINDING** http://software.broadinstitute.org/gsea/msigdb/cards/HORMONE_BINDING.html

  - **HORMONE_ACTIVITY** http://software.broadinstitute.org/gsea/msigdb/cards/HORMONE_ACTIVITY.html

## Vascular related

  - **VASCULATURE_DEVELOPMENT** http://software.broadinstitute.org/gsea/msigdb/cards/VASCULATURE_DEVELOPMENT.html

## Cardiac related

  - **BIOCARTA_CARDIACEGF_PATHWAY** http://software.broadinstitute.org/gsea/msigdb/cards/BIOCARTA_CARDIACEGF_PATHWAY.html