https://github.com/sjackman/assembly-graph

Compare assembly graph file formats
https://github.com/sjackman/assembly-graph

Last synced: about 2 months ago
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Compare assembly graph file formats

• Host: GitHub
• URL: https://github.com/sjackman/assembly-graph
• Owner: sjackman
• Created: 2014-07-20T08:48:11.000Z (over 10 years ago)
• Default Branch: master
• Last Pushed: 2015-07-23T21:43:05.000Z (over 9 years ago)
• Last Synced: 2024-10-13T20:46:44.007Z (3 months ago)
• Language: Makefile
• Size: 184 KB
• Stars: 15
• Watchers: 5
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

Awesome Lists containing this project

README

        
Compare assembly graph file formats

===================================

+ ASQG [Sample](sample.asqg), [Specification](https://github.com/jts/sga/wiki/ASQG-Format)

+ FASTG [Specification](http://fastg.sourceforge.net/FASTG_Spec_v1.00.pdf)

+ GraphViz [Sample](sample.gv), [Specification](https://github.com/bcgsc/abyss/wiki/ABySS-File-Formats#dot)

+ GFA [Sample](sample.gfa), [Specification](https://github.com/pmelsted/GFA-spec/blob/master/GFA-spec.md)

+ SAM [Sample](sample.sam), [Specification](http://samtools.github.io/hts-specs/SAMv1.pdf)

Render `sample.gv` using GraphViz.

![sample.gv](sample.gv.png)

Render `loop.gv` using GraphViz.

![loop.gv](loop.gv.png)