https://github.com/sjackman/pgcpdna-wgs-assembly

:evergreen_tree: Analyze plastid DNA (cpDNA) of white spruce (Picea glauca)
https://github.com/sjackman/pgcpdna-wgs-assembly

Last synced: about 1 month ago
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:evergreen_tree: Analyze plastid DNA (cpDNA) of white spruce (Picea glauca)

• Host: GitHub
• URL: https://github.com/sjackman/pgcpdna-wgs-assembly
• Owner: sjackman
• License: gpl-2.0
• Created: 2013-10-22T22:24:07.000Z (about 11 years ago)
• Default Branch: master
• Last Pushed: 2013-10-23T05:48:34.000Z (about 11 years ago)
• Last Synced: 2024-10-13T20:46:43.455Z (2 months ago)
• Homepage:
• Size: 125 KB
• Stars: 0
• Watchers: 3
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
White spurce (*Picea glauca*) plastid DNA

=========================================

Analyze plastid DNA (cpDNA) of the white spruce (*Picea glauca*).

Dependencies

============

* bioawk

* bwa

* cap3

* samskrit

* samtools

1. Install [Homebrew](http://brew.sh)

2. Install dependencies

```sh

brew tap homebrew/science

brew tap sjackman/tap

brew install bioawk bwa cap3 samskrit samtools

```

Author

======

Written by [Shaun Jackman](http://sjackman.ca).

Copyright

=========

Copyright 2013 Shaun Jackman

[License GPLv2+](LICENSE): This program is free software; you can

redistribute it and/or modify it under the terms of the GNU General

Public License as published by the Free Software Foundation; either

version 2 of the License, or (at your option) any later version.