https://github.com/sjczheng/EpiDISH

This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representing a mixture of such cell-types. Inference proceeds via one of 3 methods (Robust Partial Correlations-RPC, Cibersort (CBS), Constrained Projection (CP)), as determined by user.
https://github.com/sjczheng/EpiDISH

Last synced: 15 days ago
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This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representing a mixture of such cell-types. Inference proceeds via one of 3 methods (Robust Partial Correlations-RPC, Cibersort (CBS), Constrained Projection (CP)), as determined by user.

• Host: GitHub
• URL: https://github.com/sjczheng/EpiDISH
• Owner: sjczheng
• Created: 2016-09-16T21:20:15.000Z (over 8 years ago)
• Default Branch: devel
• Last Pushed: 2024-11-11T12:51:33.000Z (6 months ago)
• Last Synced: 2025-04-15T11:44:32.213Z (20 days ago)
• Language: R
• Size: 4.53 MB
• Stars: 50
• Watchers: 3
• Forks: 13
• Open Issues: 5
• Metadata Files:
  • Readme: README.md

Awesome Lists containing this project

• awesome-deconvolution - EpiDISH - Sample-Heterogeneity. (see also: [Teschendorff et al 2017](https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-017-1511-5)); tags: methylation; dna_methylation; dnam; epigenetics; (Methods)

README