https://github.com/snesic/manhattan-plot-eqtls-per-gene

https://github.com/snesic/manhattan-plot-eqtls-per-gene

eqtl genomics-visualization

Last synced: 8 months ago
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• Host: GitHub
• URL: https://github.com/snesic/manhattan-plot-eqtls-per-gene
• Owner: snesic
• License: gpl-3.0
• Created: 2018-12-13T13:22:39.000Z (over 7 years ago)
• Default Branch: master
• Last Pushed: 2018-12-13T13:24:50.000Z (over 7 years ago)
• Last Synced: 2025-05-07T21:03:24.251Z (about 1 year ago)
• Topics: eqtl, genomics-visualization
• Language: R
• Size: 4.58 MB
• Stars: 2
• Watchers: 1
• Forks: 2
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# Manhattan plot

Manhattan plot of SNVs with their corresonding (-log) p-values associated with expression of a gene selected from the list.

p-values are obtained using [MatrixEQTL](https://cran.r-project.org/web/packages/MatrixEQTL/index.html).

Sample data files are results of MatrixEQTL using the [Geuvadis](https://www.ebi.ac.uk/Tools/geuvadis-das/?r=2:234273242-234273242) dataset.

![Manhattan_shiny](https://github.com/snesic/manhattan-plot-eQTLs-per-gene/blob/master/Data/manhattan.png)