https://github.com/snitkin-lab-umich/cauris_dotplot
A set of simple scripts for generating synteny dot plots from C auris assemblies
https://github.com/snitkin-lab-umich/cauris_dotplot
Last synced: about 1 month ago
JSON representation
A set of simple scripts for generating synteny dot plots from C auris assemblies
- Host: GitHub
- URL: https://github.com/snitkin-lab-umich/cauris_dotplot
- Owner: Snitkin-Lab-Umich
- Created: 2025-03-19T01:04:41.000Z (2 months ago)
- Default Branch: main
- Last Pushed: 2025-03-25T18:11:58.000Z (about 2 months ago)
- Last Synced: 2025-03-25T19:24:49.248Z (about 2 months ago)
- Language: Python
- Size: 3.74 MB
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
Awesome Lists containing this project
README
# cauris_dotplot
This script takes input assemblies (in the form of .fasta files) and generates dot plots from them. In order to run this script on the Great Lakes cluster, load these modules first:
module load Bioinformatics mummer/4.0.0rc1
module load R/4.4.0
Also ensure you have ggplot installed in R. A sample reference fasta is included in the reference folder (https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_002759435.3/).