https://github.com/snitkin-lab-umich/ml-crkp-infection-manuscript
Code and some data related to manuscript on machine learning to study CRKP colonization and infection
https://github.com/snitkin-lab-umich/ml-crkp-infection-manuscript
Last synced: about 2 months ago
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Code and some data related to manuscript on machine learning to study CRKP colonization and infection
- Host: GitHub
- URL: https://github.com/snitkin-lab-umich/ml-crkp-infection-manuscript
- Owner: Snitkin-Lab-Umich
- License: mit
- Created: 2020-07-02T13:13:56.000Z (almost 5 years ago)
- Default Branch: master
- Last Pushed: 2021-06-10T17:44:15.000Z (almost 4 years ago)
- Last Synced: 2025-01-26T17:36:19.835Z (4 months ago)
- Language: R
- Size: 5.59 MB
- Stars: 1
- Watchers: 2
- Forks: 1
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# Patient and microbial genomic factors associated with carbapenem-resistant Klebsiella pneumoniae extraintestinal colonization and infection
Code and some data relevant to this manuscript. Manuscript [here](https://msystems.asm.org/content/6/2/e00177-21).
Please note that, since some of the data we used is PHI, we are not able to provide full reproducibility; however, all scripts used to perform the analyses are included in the `scripts` directory and we provide the genomic data used as input to the machine learning models.