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https://github.com/sokrypton/ColabDesign
Making Protein Design accessible to all via Google Colab!
https://github.com/sokrypton/ColabDesign
Last synced: about 1 month ago
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Making Protein Design accessible to all via Google Colab!
- Host: GitHub
- URL: https://github.com/sokrypton/ColabDesign
- Owner: sokrypton
- License: other
- Created: 2022-02-02T03:43:06.000Z (almost 3 years ago)
- Default Branch: main
- Last Pushed: 2024-10-27T14:48:49.000Z (about 2 months ago)
- Last Synced: 2024-11-08T06:17:04.570Z (about 1 month ago)
- Language: Python
- Size: 248 MB
- Stars: 615
- Watchers: 28
- Forks: 145
- Open Issues: 49
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Metadata Files:
- Readme: README.md
- License: LICENSE.txt
Awesome Lists containing this project
- awesome-protein-design-software - ColabDesign
README
# ColabDesign
### Making Protein Design accessible to all via Google Colab!
- P(structure | sequence)
- [TrDesign](/tr) - using TrRosetta for design
- [AfDesign](/af) - using AlphaFold for design
- [WIP] [RfDesign](https://github.com/RosettaCommons/RFDesign) - using RoseTTAFold for design
- P(sequence | structure)
- [ProteinMPNN](/mpnn)
- [WIP] TrMRF
- P(sequence)
- [WIP] [MSA_transformer](/esm_msa)
- [WIP] [SEQ](/seq) - (GREMLIN, mfDCA, arDCA, plmDCA, bmDCA, etc)
- P(structure)
- [Rfdiffusion](/rf)### Where can I chat with other ColabDesign users?
- See our [Discord](https://discord.gg/gna8maru7d) channel!### Presentations
[Slides](https://docs.google.com/presentation/d/1Zy7lf_LBK0_G3e7YQLSPP5aj_-AR5I131fTsxJrLdg4/)
[Talk](https://www.youtube.com/watch?v=2HmXwlKWMVs)### Contributors:
- Sergey Ovchinnikov [@sokrypton](https://github.com/sokrypton)
- Shihao Feng [@JeffSHF](https://github.com/JeffSHF)
- Justas Dauparas [@dauparas](https://github.com/dauparas)
- Weikun.Wu [@guyujun](https://github.com/guyujun) (from [Levinthal.bio](http://levinthal.bio/en/))
- Christopher Frank [@chris-kafka](https://github.com/chris-kafka)