https://github.com/sorgerlab/earm

Extrinsic Apoptosis Reaction Model
https://github.com/sorgerlab/earm

Last synced: 3 months ago
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Extrinsic Apoptosis Reaction Model

• Host: GitHub
• URL: https://github.com/sorgerlab/earm
• Owner: sorgerlab
• Fork: true (clopezx/earm)
• Created: 2012-07-30T14:51:35.000Z (over 12 years ago)
• Default Branch: master
• Last Pushed: 2020-10-28T01:07:32.000Z (about 4 years ago)
• Last Synced: 2024-07-18T23:38:23.810Z (4 months ago)
• Language: Python
• Homepage: http://sorgerlab.github.com/earm
• Size: 11.5 MB
• Stars: 1
• Watchers: 6
• Forks: 5
• Open Issues: 4
• Metadata Files:
  • Readme: README.rst

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README

        
EARM

====

Extrinsic Apoptosis Reaction Model

http://sorgerlab.github.com/earm

EARM is a family of models of the extrinsic apoptosis pathway written using the

Python modeling framework PySB. Model variants focus on exploring alternative

hypotheses for the mechanism of Mitochondrial Outer Membrane Permeabilization

(MOMP), controlled by the Bcl-2 family of proteins.

Documentation

-------------

The documentation is available online at http://earm.readthedocs.org/ . The

documentation source files are available locally in the doc/ subdirectory.

Download

--------

EARM is hosted on GitHub at http://github.com/sorgerlab/earm .

The code is available via the Download link there, or you can clone the

repository with Git:

    git clone git://github.com/sorgerlab/earm

To use the models you'll need to install PySB and its associated

dependencies. More information on using the models is available in the EARM

documentation.

Authors

-------

Carlos F. Lopez ([email protected])

Jeremy L. Muhlich ([email protected])

John A. Bachman ([email protected])