https://github.com/specht/proteomatic

Proteomatic: a free and accessible Proteomics pipeline
https://github.com/specht/proteomatic

Last synced: 10 months ago
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Proteomatic: a free and accessible Proteomics pipeline

• Host: GitHub
• URL: https://github.com/specht/proteomatic
• Owner: specht
• License: gpl-3.0
• Created: 2010-04-13T19:27:33.000Z (about 16 years ago)
• Default Branch: master
• Last Pushed: 2017-05-18T11:19:02.000Z (about 9 years ago)
• Last Synced: 2025-03-22T20:26:08.180Z (about 1 year ago)
• Language: C++
• Homepage: http://www.proteomatic.org
• Size: 4.87 MB
• Stars: 5
• Watchers: 3
• Forks: 0
• Open Issues: 17
• Metadata Files:
  • Readme: README.textile
  • License: COPYING

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README

          
h1. Synopsis

Proteomatic provides a free and accessible proteomics data processing pipeline. Bits of functionality can be chained together, and functionality is provided through self-descriptive scripts.

More information can be found at "https://proteomatic.org/":https://proteomatic.org/.

h1. Building Proteomatic

h2. Prerequisites

Proteomatic requires "Qt":http://qt.digia.com/, "libyaml-cpp":http://code.google.com/p/yaml-cpp/, "QuaZIP":http://quazip.sourceforge.net/ and "Ruby":http://www.ruby-lang.org/. It also requires "libmd5-rfc":http://sourceforge.net/projects/libmd5-rfc/ but a copy of this library's source code is already included in the source code of Proteomatic.

h2. Building procedure


$ git submodule update --init

$ qmake "PROTEOMATIC_PORTABLE=1"

$ make release



This gives you a version which will run from within the source directory, downloads all scripts and required software packages into its own directory and does not change anything else in the file tree.