https://github.com/srom/afpd

AlphaFold pulldown implementation adapted from https://github.com/KosinskiLab/AlphaPulldown
https://github.com/srom/afpd

alphafold alphafold-multimer alphapulldown colabfold

Last synced: 26 days ago
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AlphaFold pulldown implementation adapted from https://github.com/KosinskiLab/AlphaPulldown

• Host: GitHub
• URL: https://github.com/srom/afpd
• Owner: srom
• Created: 2024-02-23T12:49:43.000Z (11 months ago)
• Default Branch: main
• Last Pushed: 2024-12-18T14:34:16.000Z (about 1 month ago)
• Last Synced: 2024-12-18T15:31:02.449Z (about 1 month ago)
• Topics: alphafold, alphafold-multimer, alphapulldown, colabfold
• Language: Jupyter Notebook
• Homepage:
• Size: 2.52 MB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
AlphaFold pulldown

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Code to prep and run AlphaFold pulldown.

Steps:

- Prepare fasta file with sequences bait:protein

- Run MSA search with colabfold search functionality

- Run AlphaFold predictions

- Score predictions with DockQ