https://github.com/ssi-dk/bifrost_salmonella_subspecies_dtartrate

https://github.com/ssi-dk/bifrost_salmonella_subspecies_dtartrate

Last synced: 3 days ago
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• Host: GitHub
• URL: https://github.com/ssi-dk/bifrost_salmonella_subspecies_dtartrate
• Owner: ssi-dk
• License: mit
• Created: 2021-08-20T10:54:32.000Z (about 3 years ago)
• Default Branch: main
• Last Pushed: 2024-02-29T09:38:52.000Z (9 months ago)
• Last Synced: 2024-03-01T10:37:25.204Z (9 months ago)
• Language: Python
• Size: 233 KB
• Stars: 0
• Watchers: 6
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • Changelog: HISTORY.md
  • License: LICENSE

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README

        
# bifrost_salmonella_subspecies_dtartrate

This component is run given a sample id already added into the bifrostDB. If the sample is registered as Salmonella enterica, this will look up the serotype in enterobase using the ST.

## Howto launch

  /bifrost/components/bifrost_salmonella_subspecies_dtartrate$ docker-compose run bifrost_salmonella_subspecies_dtartrate

## How to debug

  /bifrost/components/bifrost_salmonella_subspecies_dtartrate$ docker-compose run --entrypoint=bash bifrost_salmonella_subspecies_dtartrate