https://github.com/ssi-dk/bifrostlib

Python API for bifrost
https://github.com/ssi-dk/bifrostlib

Last synced: 3 days ago
JSON representation

Python API for bifrost

• Host: GitHub
• URL: https://github.com/ssi-dk/bifrostlib
• Owner: ssi-dk
• License: mit
• Created: 2020-09-17T07:12:38.000Z (about 4 years ago)
• Default Branch: master
• Last Pushed: 2024-09-23T11:10:11.000Z (about 2 months ago)
• Last Synced: 2024-11-06T20:20:00.792Z (8 days ago)
• Language: Python
• Size: 237 KB
• Stars: 0
• Watchers: 3
• Forks: 1
• Open Issues: 3
• Metadata Files:
  • Readme: README.md
  • Changelog: HISTORY.md
  • License: LICENSE

Awesome Lists containing this project

README

        
# bifrostlib

![run_tests](https://github.com/ssi-dk/bifrostlib/workflows/run_tests/badge.svg)

![publish_to_pypi](https://github.com/ssi-dk/bifrostlib/workflows/publish_to_pypi/badge.svg)

This image is run given a directory of reads and a metadata.tsv which provides samples expected and 

provided species. The script will then create a sample object for all samples found and a run object 

containing all the sample objects. A script is then created based of the provided pre, per, and post

scripts that can are customized to each install. Running this script will then create 

sample_component objects as each sample will be ran against the provided components in the per 

script