https://github.com/ssi-dk/bps_fbi_fsc_virulencefinder

Bash scripts to run virulencefinder and serotypefinder in local settings on ecoli fasta and fastq.gz files.
https://github.com/ssi-dk/bps_fbi_fsc_virulencefinder

assemblies bash ecoli rawreads serotypefinder virulencefinder

Last synced: 3 days ago
JSON representation

Bash scripts to run virulencefinder and serotypefinder in local settings on ecoli fasta and fastq.gz files.

• Host: GitHub
• URL: https://github.com/ssi-dk/bps_fbi_fsc_virulencefinder
• Owner: ssi-dk
• Created: 2024-02-29T13:31:38.000Z (9 months ago)
• Default Branch: main
• Last Pushed: 2024-06-20T13:37:14.000Z (5 months ago)
• Last Synced: 2024-06-21T05:49:13.407Z (5 months ago)
• Topics: assemblies, bash, ecoli, rawreads, serotypefinder, virulencefinder
• Language: Shell
• Homepage:
• Size: 6.84 KB
• Stars: 0
• Watchers: 4
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

Awesome Lists containing this project

README

        
# BPS_FBI_FSC_VirulenceFinder

Bash scripts to run virulencefinder and serotypefinder in local settings on fasta and fastq.gz files

## How to use:

To start open the config file, fill it in with your local system paths, and save it

```bash

bash install.sh

bash run_virulencefinder.sh

bash cleanup.sh

```