https://github.com/ssi-dk/diseasystore

R package that provides a feature store tailored towards disease modelling
https://github.com/ssi-dk/diseasystore

Last synced: 3 days ago
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R package that provides a feature store tailored towards disease modelling

• Host: GitHub
• URL: https://github.com/ssi-dk/diseasystore
• Owner: ssi-dk
• License: gpl-3.0
• Created: 2023-06-12T13:35:17.000Z (over 1 year ago)
• Default Branch: main
• Last Pushed: 2024-10-29T08:03:55.000Z (17 days ago)
• Last Synced: 2024-10-29T09:22:05.386Z (17 days ago)
• Language: R
• Homepage: https://ssi-dk.github.io/diseasystore/
• Size: 6.28 MB
• Stars: 2
• Watchers: 1
• Forks: 1
• Open Issues: 7
• Metadata Files:
  • Readme: README.Rmd
  • Changelog: NEWS.md
  • License: LICENSE.md

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README

        
{% extends '.github/templates/README_template.Rmd' %}

{% block body %}

## Overview

The `diseasystore` package provides feature stores implemented in R

specifically designed for serve disease data for epidemic preparedness.

What makes a `diseasystore` special, is that features can be

automatically coupled and stratified within the `diseasystore` package.

Consult the Quick start vignette to see it in action

(`vignette("quick-start", package = "diseasystore")`).

The package forms the data-backbone of the `{diseasy}` package.

## Handling of diverse data sources

Different data sources are handled by individual `diseasystores` which

each facilitate access to the relevant disease data for the given data

source.

Data for different diseases will typically be structured in different

ways. The `diseasystore` package currently implements the Google Health

COVID-19 Open Repository with more `diseasystores` on the way.

The `diseasystore` package is designed to handle both individual-level

data (typically protected) and semi-aggregated data (typically publicly

available).

If the data is at the individual-level, the feature store is fully

dynamic and can adapt to (virtually) any stratification that the user

specifies. If the data conversely is semi-aggregated, the data can only

be stratified at the levels of the semi-aggregation (or at higher

levels).

{% endblock %}