https://github.com/starsareintherose/staden-lg

STADEN Last Generation
https://github.com/starsareintherose/staden-lg

Last synced: 23 days ago
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STADEN Last Generation

• Host: GitHub
• URL: https://github.com/starsareintherose/staden-lg
• Owner: starsareintherose
• Created: 2023-04-13T19:56:33.000Z (over 1 year ago)
• Default Branch: dev
• Last Pushed: 2023-04-13T19:56:54.000Z (over 1 year ago)
• Last Synced: 2024-05-02T03:15:37.611Z (8 months ago)
• Language: Fortran
• Homepage:
• Size: 7.21 MB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# STADEN-LG

STADEN Last Generation

## Introduction

 





This pkg is a fork of STADEN 1993 v12.1. Currently, I fixed the bug for compiling, but not completely.

## Build

You should clone this repo and cd to the repo get the `$pkgname` via `pwd` 

```

# build easy

for pkgalone in ted newted abi alf Misc cop convert expGetSeq frog getMCH indexseqlibs bap/osp-bits

do

cd $pkgname/src/$pkgalone

make

done

# compile x related

cd $pkgname/src/staden

bash gen_a.sh

make mep dap sap splitp1 splitp2 splitp3 gip sethelp convert_project sapf nipf xmep xdap xsap

cd $pkgname/src/bap

make bap xbap

for pkgalone in vepe update_subclones scf

do

cd $pkgname/src/$pkgalone

make

done

```

Or you can get this pkg from BioArchLinux repo.

## Todo

Following pkgs need your hands.

- [ ] nip

- [ ] sip

- [ ] rep

- [ ] lip

- [ ] vep

- [ ] nipl

- [ ] pipl

- [ ] sipl

- [ ] xnip

- [ ] xpip

- [ ] xsip

## License

- Copyright (c) 1993 MEDICAL RESEARCH COUNCIL (MRC), UK. BSD License.

- Copyright (c) 2023~ Everyone. GPL License.