https://github.com/stazizov/blur_artifacts_detection
Detection of Blur Artifacts in Histopathological Whole-Slide Images of Endomyocardial Biopsies
https://github.com/stazizov/blur_artifacts_detection
biopsy blur-detection boosting cv medicine ml neural-networks rcnn wavelet-transform yolov7
Last synced: 8 months ago
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Detection of Blur Artifacts in Histopathological Whole-Slide Images of Endomyocardial Biopsies
- Host: GitHub
- URL: https://github.com/stazizov/blur_artifacts_detection
- Owner: stazizov
- License: mit
- Created: 2022-11-30T09:12:27.000Z (almost 3 years ago)
- Default Branch: main
- Last Pushed: 2023-01-02T18:01:59.000Z (almost 3 years ago)
- Last Synced: 2024-05-14T00:18:16.634Z (over 1 year ago)
- Topics: biopsy, blur-detection, boosting, cv, medicine, ml, neural-networks, rcnn, wavelet-transform, yolov7
- Language: Jupyter Notebook
- Homepage:
- Size: 82.2 MB
- Stars: 1
- Watchers: 1
- Forks: 1
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# Blur Artifacts Detection
Detection of Blur Artifacts in Histopathological Whole-Slide Images of Endomyocardial Biopsies
## Examples
### full-size image
### zoomed patch
## install dependencies
```
python -m pip install -r requirements.txt
```
## faster-rcnn
```
cd faster_rcnn
git clone 'https://github.com/facebookresearch/detectron2
python -m pip install -e detectron2
python inference.py --path2image filename.png --path2save another_filename.png --threshold 0.5
```
## YOLOv7
```
cd yolo
git clone https://github.com/WongKinYiu/yolov7.git
python -m pip install -r yolov7/requirements.txt
python yolov7/detect.py --weights best.pt --conf 0.001 --img-size 1280 --iou-thres 0.25 --source image.png
```
## catboost
```
cd catboost
python inference.py --path2image filename.png --path2save another_filename.png
```