https://github.com/stemangiola/tidyseurat

Seurat meets tidyverse. The best of both worlds.
https://github.com/stemangiola/tidyseurat

dplyr ggplot2 normalization pca purrr sct seurat single-cell single-cell-rna-seq tibble tidyr tidyverse transcripts tsne umap

Last synced: 1 day ago
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Seurat meets tidyverse. The best of both worlds.

• Host: GitHub
• URL: https://github.com/stemangiola/tidyseurat
• Owner: stemangiola
• Created: 2020-08-23T06:25:33.000Z (over 5 years ago)
• Default Branch: master
• Last Pushed: 2026-01-15T00:18:32.000Z (about 1 month ago)
• Last Synced: 2026-01-15T07:36:01.463Z (about 1 month ago)
• Topics: dplyr, ggplot2, normalization, pca, purrr, sct, seurat, single-cell, single-cell-rna-seq, tibble, tidyr, tidyverse, transcripts, tsne, umap
• Language: R
• Homepage: https://stemangiola.github.io/tidyseurat/
• Size: 48.3 MB
• Stars: 160
• Watchers: 7
• Forks: 14
• Open Issues: 9
• Metadata Files:
  • Readme: README.Rmd

Awesome Lists containing this project

README

          
---

title: "tidyseurat - part of tidytranscriptomics"

output: github_document

always_allow_html: true

---

[![Lifecycle:maturing](https://img.shields.io/badge/lifecycle-maturing-blue.svg)](https://lifecycle.r-lib.org/articles/stages.html) [![R build status](https://github.com/stemangiola/tidyseurat/workflows/R-CMD-check/badge.svg)](https://github.com/stemangiola/tidyseurat/actions/)



 



```{r echo=FALSE}

knitr::opts_chunk$set( fig.path = "man/figures/")

```

```{r include=FALSE}

# Set path to plotly screenshot. We don't run the plotly code chunk as most servers do not have javascript libraries needed for interactive plotting

screenshot <- "man/figures/plotly.png"

# The chunk below uses Rmd in man/fragments to avoid duplication, as the content is shared with the vignette and README. As suggested here: https://www.garrickadenbuie.com/blog/dry-vignette-and-readme/

visual_cue <- "man/figures/logo_interaction-01.png"

```

```{r child="man/fragments/intro.Rmd"}

```