https://github.com/stephenturner/alpinist
Alpine Linux image with R, a subset of Tidyverse packages, and domain-specific tools for genomic data manipulation and analysis.
https://github.com/stephenturner/alpinist
bioinformatics docker r
Last synced: 5 months ago
JSON representation
Alpine Linux image with R, a subset of Tidyverse packages, and domain-specific tools for genomic data manipulation and analysis.
- Host: GitHub
- URL: https://github.com/stephenturner/alpinist
- Owner: stephenturner
- Created: 2022-12-21T12:35:52.000Z (over 3 years ago)
- Default Branch: main
- Last Pushed: 2022-12-21T21:20:28.000Z (over 3 years ago)
- Last Synced: 2025-10-04T06:35:46.724Z (10 months ago)
- Topics: bioinformatics, docker, r
- Language: Dockerfile
- Homepage: https://hub.docker.com/r/stephenturner/alpinist
- Size: 1000 Bytes
- Stars: 4
- Watchers: 2
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
Awesome Lists containing this project
README
# alpinist
Alpine Linux image with R, a subset of Tidyverse packages, and domain-specific tools for genomic data manipulation and analysis. Included software:
- [htslib 1.16](https://github.com/samtools/htslib/releases/tag/1.16)
- [bcftools 1.16](https://github.com/samtools/bcftools/releases/tag/1.16)
- [samtools 1.16](https://github.com/samtools/samtools/releases/tag/1.16)
- [akt 0.3.3](https://github.com/Illumina/akt)
- R 4.2.2
- R packages:
- tibble
- dplyr
- readr
- tidyr
- purrr
- stringr
- ggplot2
- [kgp](https://github.com/stephenturner/kgp)
Pull from Docker Hub or build locally:
```sh
# Pull from docker hub
docker pull stephenturner/alpinist && docker tag stephenturner/alpinist alpinist
# Build locally
docker build --no-cache --tag alpinist .
# Tag and push
# docker tag alpinist stephenturner/alpinist:latest
# docker tag alpinist stephenturner/alpinist:1.0.0
# docker push --all-tags stephenturner/alpinist
```