https://github.com/stufield/stabilityselectr

The stabilityselectr package performs stability selection with a variety of kernels provided by the 'glmnet' package, and provides simple tools for plotting and extracting selected features. There is additional functionality designed to facilitate various forms of permutation clustering analyses.
https://github.com/stufield/stabilityselectr

Last synced: about 1 year ago
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The stabilityselectr package performs stability selection with a variety of kernels provided by the 'glmnet' package, and provides simple tools for plotting and extracting selected features. There is additional functionality designed to facilitate various forms of permutation clustering analyses.

• Host: GitHub
• URL: https://github.com/stufield/stabilityselectr
• Owner: stufield
• License: other
• Created: 2024-09-29T18:41:19.000Z (over 1 year ago)
• Default Branch: main
• Last Pushed: 2025-03-31T16:11:24.000Z (about 1 year ago)
• Last Synced: 2025-03-31T17:27:09.071Z (about 1 year ago)
• Language: R
• Homepage: https://stufield.github.io/stabilityselectr/
• Size: 3.29 MB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.Rmd
  • Changelog: NEWS.md
  • License: LICENSE
  • Support: .github/SUPPORT.md

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README

          
---

output: github_document

---

```{r setup, include = FALSE}

options(width = 100)

Sys.setlocale("LC_COLLATE", "en_US.UTF-8") # ensure common sorting envir

knitr::opts_chunk$set(

  collapse = TRUE,

  comment = "#>",

  fig.path = "man/figures/README-",

  out.width = "100%"

)

ver <- desc::desc_get_version(".")

ver <- paste0("https://img.shields.io/badge/Version-", ver,

              "-success.svg?style=flat&logo=github")

```

# The `stabilityselectr` package

![GitHub version](`r ver`)

[![CRAN status](http://www.r-pkg.org/badges/version/stabilityselectr)](https://cran.r-project.org/package=stabilityselectr)

[![R-CMD-check](https://github.com/stufield/stabilityselectr/workflows/R-CMD-check/badge.svg)](https://github.com/stufield/stabilityselectr/actions)

[![](https://cranlogs.r-pkg.org/badges/grand-total/stabilityselectr)](https://cran.r-project.org/package=stabilityselectr)

[![test coverage](https://codecov.io/gh/stufield/stabilityselectr/branch/main/graph/badge.svg)](https://app.codecov.io/gh/stufield/stabilityselectr?branch=main)

[![lifecycle: stable](https://img.shields.io/badge/lifecycle-stable-brightgreen.svg)](https://lifecycle.r-lib.org/articles/stages.html#stable)

[![License: MIT](https://img.shields.io/badge/License-MIT-blue.svg)](https://choosealicense.com/licenses/mit/)

## Overview

The `stabilityselectr` package performs stability selection with a 

variety of kernels provided by the `glmnet` package, and provides 

simple tools for plotting and extracting selected features.

There is additional functionality designed to facilitate

various forms of permutation clustering analyses.

----------------

## Installation

```{r install-git, eval = FALSE}

# current dev version

remotes::install_github("stufield/stabilityselectr")

# or a specific version

remotes::install_github("stufield/stabilityselectr@v0.0.2")

```

----------------

## Usage

To load `stabilityselectr` simply make a call to `library()` as usual:

```{r, eval = FALSE}

library(stabilityselectr)

```

## Help

```{r help, eval = FALSE}

library(help = stabilityselectr)

```

## Package Notes

* The `stabilityselectr` package is easy to use.

* It is my first go-to when looking at dimensionality reduction

  and upstream feature selection.