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https://github.com/suchapalaver/fastas2kmers
A naive implementation of a k-mer counter in Python, takes fasta files and k-mer length requests and outputs all k-mers of length k, their reverse complement, and their frequency within their respective sequence for each sequence in the file.
https://github.com/suchapalaver/fastas2kmers
fasta-format fasta-sequences kmer kmer-counting kmer-frequency-count kmer-length kmers
Last synced: 26 days ago
JSON representation
A naive implementation of a k-mer counter in Python, takes fasta files and k-mer length requests and outputs all k-mers of length k, their reverse complement, and their frequency within their respective sequence for each sequence in the file.
- Host: GitHub
- URL: https://github.com/suchapalaver/fastas2kmers
- Owner: suchapalaver
- License: mit
- Created: 2021-06-28T21:04:35.000Z (over 3 years ago)
- Default Branch: main
- Last Pushed: 2022-03-28T20:41:58.000Z (over 2 years ago)
- Last Synced: 2023-03-03T23:43:42.047Z (over 1 year ago)
- Topics: fasta-format, fasta-sequences, kmer, kmer-counting, kmer-frequency-count, kmer-length, kmers
- Language: Python
- Homepage:
- Size: 17.6 KB
- Stars: 6
- Watchers: 1
- Forks: 0
- Open Issues: 0