https://github.com/supermaxiste/earlypolyploiddnamethylation
https://github.com/supermaxiste/earlypolyploiddnamethylation
Last synced: about 2 months ago
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- Host: GitHub
- URL: https://github.com/supermaxiste/earlypolyploiddnamethylation
- Owner: supermaxiste
- Created: 2022-01-24T12:17:08.000Z (over 3 years ago)
- Default Branch: master
- Last Pushed: 2022-10-11T11:43:25.000Z (over 2 years ago)
- Last Synced: 2025-02-10T06:11:46.744Z (3 months ago)
- Language: R
- Size: 58.3 MB
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
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Metadata Files:
- Readme: README.md
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README
# Data analysis repository
This repository contains all the scripts associated to my PhD thesis. Each folder includes different stages and output of the analyses:
- **ARPEGGIO_analyses** includes `config.yaml` and `metadata.txt` files to use to reproduce all the analyses done with [ARPEGGIO](https://github.com/supermaxiste/ARPEGGIO) together with reports about data quality analyses. These files are provided for all comparisons discussed. More details about how to use these files can be found in the `README` files in each folder. For additional questions, feel free to open an issue.
- **downstream_analyses** includes all the scripts used for main and supplementary results (plots included).
- **METHImpute_analyses** includes all scripts and files required to run and reproduce the results obtained with `METHImpute`. Since the procedure is more elaborate and the output was used for further downstream analyses, this part is in a separate folder.