https://github.com/suqingdong/pubmed2

NCBI PubMed Crawler
https://github.com/suqingdong/pubmed2

crawler ncbi pubmed python

Last synced: 6 months ago
JSON representation

NCBI PubMed Crawler

• Host: GitHub
• URL: https://github.com/suqingdong/pubmed2
• Owner: suqingdong
• Created: 2018-04-27T05:24:17.000Z (about 8 years ago)
• Default Branch: master
• Last Pushed: 2020-12-14T03:55:33.000Z (over 5 years ago)
• Last Synced: 2025-11-27T13:27:31.435Z (7 months ago)
• Topics: crawler, ncbi, pubmed, python
• Language: Python
• Homepage:
• Size: 2.27 MB
• Stars: 6
• Watchers: 0
• Forks: 5
• Open Issues: 0
• Metadata Files:
  • Readme: README.rst

Awesome Lists containing this project

README

          
**This project has been moved to: https://github.com/suqingdong/pypubmed**

Install

------------

1 install from pip

.. code-block:: console

    pip install pubmed2

2 install from source code

.. code-block:: console

    git clone https://github.com/suqingdong/pubmed2.git

    cd pubmed2

    python setup.py install

3 use it directly

.. code-block:: console

    git clone https://github.com/suqingdong/pubmed2.git

    cd pubmed2/pubmed2

    pubmed -h

Usage

------------

.. code-block:: console

    pubmed 'ngs AND association'

    pubmed '(LVNC) AND (mutation OR variation)' -m 50 -mif 5

FAQ

------------

*Install failed?*

- Windows maybe need `VCForPython `_

- Linux maybe need ``python-dev`` or ``python-devel``