https://github.com/svileng/itranscriptome

The experiments manager for transcriptomics datasets
https://github.com/svileng/itranscriptome

Last synced: about 1 month ago
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The experiments manager for transcriptomics datasets

• Host: GitHub
• URL: https://github.com/svileng/itranscriptome
• Owner: svileng
• License: mit
• Created: 2012-02-07T17:31:07.000Z (almost 13 years ago)
• Default Branch: master
• Last Pushed: 2012-09-28T09:36:51.000Z (over 12 years ago)
• Last Synced: 2023-10-20T23:18:20.336Z (about 1 year ago)
• Language: C#
• Homepage:
• Size: 3.96 MB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# iTranscriptome

iTranscriptome is a Windows application for storing and organising 

transcriptomic datasets from the [Gene Expression Omnibus](http://www.ncbi.nlm.nih.gov/gds/). It was developed 

during my final year at Royal Holloway University of London, with the help of Horacio Caniza and

Dr. Alberto Paccanaro from [Paccanaro Lab](http://www.paccanarolab.org/). Unfortunately, parts of it are still unfinished.

The application uses a variation of the Model-View-Controller architectural pattern and a custom Object-Relational Mapping system, 

both designed by me. Other points of interest are the parser for transcriptomic datasets and the caching system 

for the ORM (one of the few optimisations I was able to implement, as the amount of data can be considerably large). There is also a small number of simple unit tests in the Test project (unfortunately, university final year projects are not always Agile and TDD-oritented).

As I mentioned, parts of the application were left unfinished (check commit log) and it was not extensively tested. However, most of the code I wrote is documented in good detail, so it might be still useful to someone.

Note: this is a personal repository. The official repository will be 

available at [paccanarolab.org](http://www.paccanarolab.org/).