https://github.com/swarchal/platetools

An R package for plotting microtitre plates
https://github.com/swarchal/platetools

biology ggplot2 lab r

Last synced: 8 months ago
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An R package for plotting microtitre plates

• Host: GitHub
• URL: https://github.com/swarchal/platetools
• Owner: Swarchal
• License: other
• Created: 2016-06-11T16:35:22.000Z (about 10 years ago)
• Default Branch: master
• Last Pushed: 2024-03-07T16:15:26.000Z (over 2 years ago)
• Last Synced: 2025-06-03T20:08:39.874Z (about 1 year ago)
• Topics: biology, ggplot2, lab, r
• Language: R
• Homepage:
• Size: 1.63 MB
• Stars: 55
• Watchers: 7
• Forks: 15
• Open Issues: 16
• Metadata Files:
  • Readme: README.md
  • Changelog: changelog.md
  • License: LICENSE

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README

          
# platetools

[![Build Status](https://travis-ci.org/Swarchal/platetools.svg?branch=master)](https://travis-ci.org/Swarchal/platetools)

[![cran-version](http://www.r-pkg.org/badges/version/platetools)](http://cran.rstudio.com/web/packages/platetools)

[![conda-download](https://anaconda.org/conda-forge/r-platetools/badges/installer/conda.svg)](https://anaconda.org/conda-forge/r-platetools)

[![Codecov branch](https://img.shields.io/codecov/c/github/Swarchal/platetools/master.svg)](https://codecov.io/gh/Swarchal/platetools)

[![Downloads](http://cranlogs.r-pkg.org/badges/platetools)](http://www.r-pkg.org/pkg/platetools)

#### An R package for working with multi-well plates

#### Installation

CRAN:

```r

install.packages("platetools")

```

conda:

```bash

conda install -c conda-forge r-platetools

```

GitHub (dev version):

```r

remotes::install_github("swarchal/platetools")

```

### Use



```r

# example dataframe

df <- data.frame(vals = rnorm(384),

                 well = num_to_well(1:384, plate = 384))

raw_map(data = df$vals,

        well = df$well,

        plate = 384) +

    ggtitle("Example 384-well plate") +

    theme_dark() +

    scale_fill_viridis()

```

See the [vignette](https://gist.github.com/Swarchal/b938933ae9ded94b3c14d6485b27cf69) for more examples.

###### Grammar

###### Prefix:

- `raw`: raw values

- `hit`: hit detection based on standard deviations

- `z`: z-scored values

- `b`: b-scored values

- `bhit`: b-score values before hit detection

###### Suffix:

- `map`: single plate map

- `grid`: multple plate maps

e.g:  

`z_map`: z-scored plate map  

`raw_grid:` raw values, multiple plate maps  

`bhit_grid:` b-scored values, coloured by hits, multiple plates

##### Maintainer

Scott Warchal -