https://github.com/sydney-informatics-hub/bio-test-datasets
Subset bioinformatics datasets for workflow development and testing
https://github.com/sydney-informatics-hub/bio-test-datasets
Last synced: 5 months ago
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Subset bioinformatics datasets for workflow development and testing
- Host: GitHub
- URL: https://github.com/sydney-informatics-hub/bio-test-datasets
- Owner: Sydney-Informatics-Hub
- Created: 2023-09-04T04:46:21.000Z (almost 3 years ago)
- Default Branch: main
- Last Pushed: 2024-07-29T02:03:55.000Z (almost 2 years ago)
- Last Synced: 2025-07-18T02:13:49.172Z (12 months ago)
- Size: 2.03 MB
- Stars: 0
- Watchers: 6
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
Awesome Lists containing this project
README
# bio-test-datasets
Subset bioinformatics datasets for workflow development and testing.
Contains:
| Data | Description | Source | Licence |
| --------- | ------------------------------------------------------------ | ----------------------------------------------------------------------------------- | ----------------------------------------------------------------- |
| `NA12877` | Paired-end Platinum Genomes fastq files subset to 10k reads | | |
| `ggal` | Paired RNA-seq reads (.fq) and reference transcriptome (.fa) | [nf-training](https://github.com/nextflow-io/training/tree/master/nf-training/data) | [CC BY-NC-ND](https://creativecommons.org/licenses/by-nc-nd/4.0/) |
To download, run:
```bash
git clone https://github.com/Sydney-Informatics-Hub/bio-test-datasets.git
```