https://github.com/sydney-informatics-hub/tower-nf

Notes, helper scripts, instructions for running nextflow tower
https://github.com/sydney-informatics-hub/tower-nf

Last synced: 8 months ago
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Notes, helper scripts, instructions for running nextflow tower

• Host: GitHub
• URL: https://github.com/sydney-informatics-hub/tower-nf
• Owner: Sydney-Informatics-Hub
• Created: 2023-05-22T01:50:36.000Z (about 3 years ago)
• Default Branch: main
• Last Pushed: 2023-07-26T07:09:24.000Z (almost 3 years ago)
• Last Synced: 2025-03-15T22:14:56.250Z (over 1 year ago)
• Language: Shell
• Size: 4.88 KB
• Stars: 1
• Watchers: 6
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

          
# tower-nf

Notes, helper scripts, instructions for running Nextflow Tower on national HPCs. 

* Workspace set up  

* Workflow configuration 

* Launch workflows

* Troubleshooting 

* Helper scripts for NCI Gadi and Pawsey Setonix HPCs

## On NCI Gadi HPC

* Instructions for workspace and pipeline configuration up are [here](https://docs.google.com/document/d/1v7q8J67cgLyoPvxeJSX43uQmpozpUmwGCnQTqwjpWnU/edit?usp=sharing)

* Dataset input files are in `./Datasets` 

* Run the Tower agent before attempting to execute a workflow on the Tower interface