https://github.com/synbiodex/sboljs

Implementation of the Synthetic Biology Open Language (SBOL) in JavaScript
https://github.com/synbiodex/sboljs

Last synced: 4 days ago
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Implementation of the Synthetic Biology Open Language (SBOL) in JavaScript

• Host: GitHub
• URL: https://github.com/synbiodex/sboljs
• Owner: SynBioDex
• License: other
• Created: 2015-10-13T21:04:57.000Z (over 9 years ago)
• Default Branch: master
• Last Pushed: 2022-05-15T12:37:18.000Z (over 2 years ago)
• Last Synced: 2024-04-14T12:16:12.592Z (9 months ago)
• Language: JavaScript
• Homepage:
• Size: 11.1 MB
• Stars: 7
• Watchers: 5
• Forks: 7
• Open Issues: 28
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# **This library only supports SBOL2. For a JavaScript/TypeScript library with support for a wider range of SBOL versions including SBOL1 and SBOL3, see [sboljs3](https://github.com/synbiodex/sboljs3).**

--

[![Build Status](https://travis-ci.org/SynBioDex/sboljs.svg?branch=master)](https://travis-ci.org/SynBioDex/sboljs)

BSD-licensed implementation of the [Synthetic Biology Open Language](http://sbolstandard.org) (SBOL) in JavaScript.

Requires a JavaScript environment with ES6 class support (e.g. recent versions of node, Chrome, ...)

Features:

* Read generic RDF, XML

* Serialize SBOL XML, JSON

* Build SBOL documents programatically

Installation

------------

    npm install sboljs

Usage

-----

    var SBOLDocument = require('sboljs')

    SBOLDocument.loadRDFFile('foo.xml', function(err, doc) {

        doc.componentDefinitions.forEach(function(componentDefinition) {

            console.log(componentDefinition.name)

        })

    })

[Documentation](http://synbiodex.github.io/sboljs)

# Citation

If you use this library in your work, please cite

    @article{sboljs,

      author = {McLaughlin, James Alastair and Myers, Chris J. and Zundel, Zach and Wilkinson, Nathan and Atallah, Christian and Wipat, Anil},

      title = {sboljs: Bringing the Synthetic Biology Open Language to the Web Browser},

      journal = {ACS Synthetic Biology},

      volume = {8},

      number = {1},

      pages = {191-193},

      year = {2019},

      doi = {10.1021/acssynbio.8b00338},

      URL = { https://doi.org/10.1021/acssynbio.8b00338 },

      eprint = {  https://doi.org/10.1021/acssynbio.8b00338 }

    }