https://github.com/sysbiochalmers/singlecellmodeling

Code for the publication "Generation and analysis of context-specific genome-scale metabolic models derived from single-cell RNA-Seq data"
https://github.com/sysbiochalmers/singlecellmodeling

Last synced: 11 months ago
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Code for the publication "Generation and analysis of context-specific genome-scale metabolic models derived from single-cell RNA-Seq data"

• Host: GitHub
• URL: https://github.com/sysbiochalmers/singlecellmodeling
• Owner: SysBioChalmers
• License: mit
• Created: 2022-04-19T11:25:25.000Z (about 4 years ago)
• Default Branch: main
• Last Pushed: 2022-12-21T17:49:47.000Z (over 3 years ago)
• Last Synced: 2024-08-25T22:08:01.028Z (almost 2 years ago)
• Language: MATLAB
• Size: 278 KB
• Stars: 5
• Watchers: 2
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# SingleCellModeling

Code for the publication "Generation and analysis of context-specific genome-scale 

metabolic models derived from single-cell RNA-Seq data"

Important: For this code to work, the files in the "ChangesToRAVEN" folder may need to 

replace the corresponding files in RAVEN, depending on the RAVEN version. We plan

to implement ftINIT in RAVEN, and as part of that, this issue will be handled, but

in the current state, the files need to be replaced.