https://github.com/targene/targene-pipeline

Nextflow pipeline for Targeted-Learning of genetic effects
https://github.com/targene/targene-pipeline

Last synced: 9 days ago
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Nextflow pipeline for Targeted-Learning of genetic effects

• Host: GitHub
• URL: https://github.com/targene/targene-pipeline
• Owner: TARGENE
• License: mit
• Created: 2021-10-11T17:02:37.000Z (about 3 years ago)
• Default Branch: main
• Last Pushed: 2024-10-25T08:36:30.000Z (2 months ago)
• Last Synced: 2024-10-25T11:46:03.144Z (2 months ago)
• Language: Nextflow
• Homepage:
• Size: 9.16 MB
• Stars: 11
• Watchers: 3
• Forks: 0
• Open Issues: 6
• Metadata Files:
  • Readme: README.md
  • License: LICENSE
  • Citation: CITATION.cff

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README

        
# TarGene-Pipeline

## Documentation Access

Please visit [the docs](https://targene.github.io/targene-pipeline/stable/)

## Running the Workflow

Please refer to the main [NextFlow](https://www.nextflow.io/) documentation for general usage. The main point being that, depending on your cluster specifications, you will need to provide a specific `myprofile` configuration file. If you are part of the University of Edinburgh and simply using Eddie, then the `eddie` profile is already defined. Then simply run:

```bash

nextflow run TARGENE/targene-pipeline -profile myprofile -resume

```

## Live Server

```bash

]activate doc

```

```julia

using LiveServer

servedocs()

```