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https://github.com/testautomation/ci-playground-fhirbridge
disconnected from upstream copy of ehrbase/fhir-bridge
https://github.com/testautomation/ci-playground-fhirbridge
ci-cd circleci docker ehrbase fhir-bridge openehr robot robot-framework robotframework
Last synced: 12 days ago
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disconnected from upstream copy of ehrbase/fhir-bridge
- Host: GitHub
- URL: https://github.com/testautomation/ci-playground-fhirbridge
- Owner: testautomation
- Created: 2020-10-29T11:13:24.000Z (about 4 years ago)
- Default Branch: develop
- Last Pushed: 2021-02-23T19:37:11.000Z (almost 4 years ago)
- Last Synced: 2024-11-01T15:44:03.703Z (2 months ago)
- Topics: ci-cd, circleci, docker, ehrbase, fhir-bridge, openehr, robot, robot-framework, robotframework
- Language: Java
- Homepage:
- Size: 2.79 MB
- Stars: 1
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
Awesome Lists containing this project
README
# FHIR Bridge [](https://circleci.com/gh/ehrbase/fhir-bridge)
FHIR Bridge is an official component of [EHRbase](https://ehrbase.org/).
The purpose of the application is to act as a broker between an HL7 FHIR client and an openEHR server.
The implementation is based on [Apache Camel](https://camel.apache.org/) and [Open eHealth Integration Platform](https://github.com/oehf/ipf).
## Getting Started
### Prerequisites
* JDK (>= 11.0.2)
* Apache Maven (>= 3.6.0)
* EHRbase (>= v0.14.0)
* [Optional] ELK Stack: Elasticsearch, Kibana and Logstash (>= 7.7.0)
### Build the application
```shell script
$ mvn clean install
```
### Build the application and execute integration tests
```shell script
$ mvn clean install -DskipITs=false
```
:warning: When using `-DskipITs=false` option, please make sure you have an EHRbase instance up and running. The easiest way to achieve that is to use one of the provided docker-compose files in the **docker** folder:
```shell script
# Start up an EHRbase instance
cd docker
docker-compose -f docker-compose-light.yml up
```
### Run the application
```bash
$ java -jar fhir-bridge-1.0.0-SNAPSHOT.jar
```
## Docker and Docker Compose
### Build the Docker image
```
$ mvn clean spring-boot:build-image
```
### Start a Docker container
```bash
$ docker run -p 8888:8888 -e "FHIR_BRIDGE_EHRBASE_BASE_URL=http://172.17.0.1:8080/ehrbase/rest/openehr/v1/" \
--name=fhir-bridge ehrbase/fhir-bridge
```
### Setup a full environment using Docker Compose
```bash
$ cd docker
$ docker-compose -f docker-compose-full.yml up
```
## Configuration Properties
| Key | Default Value | Description |
| :--------------------------------------------------------- | :----------------------------------------------- | :---------------------------------------------------------- |
| `fhir-bridge.ehrbase.base-url` | `http://localhost:8080/ehrbase/rest/openehr/v1/` | Base URL for the EHRbase running instance. |
| `fhir-bridge.ehrbase.security.type` | `basic_auth` | HTTP authorization type used by EHRbase. |
| `fhir-bridge.ehrbase.security.username` | `myuser` | Basic Auth username. |
| `fhir-bridge.ehrbase.security.password` | `myPassword432` | Basic Auth password. |
| `fhir-bridge.ehrbase.template.prefix` | `classpath:/opt/` | Prefix to apply to template names. |
| `fhir-bridge.fhir.jpa.allow-external-references` | `true` | Allow remote references. |
| `fhir-bridge.fhir.validation.terminology.mode` | `none` | Terminology validation mode: `embedded`, `server`, `none` |
| `fhir-bridge.fhir.validation.terminology.server-url` | | Base URL of the server used for the terminology validation. |
| `fhir-bridge.compositon.debug` | `false` | Enables that the last executed Mapping is logged |
| `fhir-bridge.compositon.output-directory` | | Output directory where last mapping stored |
| `ipf.atna.audit-enabled` | `true` | Whether auditing is enabled. |
| `ipf.atna.audit-repository-host` | `localhost` | Host of the ATNA repository to send the events to. |
| `ipf.atna.audit-repository-port` | `3001` | Port of the ATNA repository to send the events to. |
| `spring.application.name` | `FHIR Bridge` | Application name. |
| `spring.datasource.password` | | Login password of the database. |
| `spring.datasource.url` | | JDBC URL of the database. |
| `spring.datasource.username` | | Login username of the database. |
| `spring.jpa.properties.hibernate.dialect` | `org.hibernate.dialect.H2Dialect` | Tells Hibernate to generate the appropriate SQL statements. |
| `spring.jpa.properties.hibernate.search.default.indexBase` | `${java.io.tmpdir}/fhir-bridge-poc/indexes` | Default base directory for the indexes. |
| `server.port` | `8888` | Server HTTP port. |
| `server.servlet.context-path` | `/fhir-bridge-poc` | Context path of the application. |