https://github.com/theislab/batchglm
Fit generalized linear models in python.
https://github.com/theislab/batchglm
differential-expression generalized-linear-models tensorflow
Last synced: 8 months ago
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Fit generalized linear models in python.
- Host: GitHub
- URL: https://github.com/theislab/batchglm
- Owner: theislab
- License: bsd-3-clause
- Created: 2018-07-02T15:34:23.000Z (almost 8 years ago)
- Default Branch: master
- Last Pushed: 2023-03-06T23:09:03.000Z (over 3 years ago)
- Last Synced: 2025-03-16T11:51:32.746Z (about 1 year ago)
- Topics: differential-expression, generalized-linear-models, tensorflow
- Language: Python
- Homepage:
- Size: 3.17 MB
- Stars: 27
- Watchers: 2
- Forks: 10
- Open Issues: 47
-
Metadata Files:
- Readme: README.md
- Contributing: docs/contributing.rst
- License: LICENSE
- Code of conduct: CODE_OF_CONDUCT.rst
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README
# Fast and scalable fitting of over-determined generalized-linear models (GLMs)
batchglm was developed in the context of [diffxpy](https://github.com/theislab/diffxpy) to allow fast model fitting for differential expression analysis for single-cell RNA-seq data. However, one can use batchglm or its concepts in other scenarios where over-determined GLMs are encountered.
```
pip install -r requirements.txt
```
To run unit tests:
```
pip install -e .
python -m unittest
```