https://github.com/theislab/nicheformer

Repository for Nicheformer: a foundation model for single-cell and spatial omics
https://github.com/theislab/nicheformer

Last synced: 10 months ago
JSON representation

Repository for Nicheformer: a foundation model for single-cell and spatial omics

• Host: GitHub
• URL: https://github.com/theislab/nicheformer
• Owner: theislab
• License: bsd-3-clause
• Created: 2024-04-15T16:39:45.000Z (over 2 years ago)
• Default Branch: main
• Last Pushed: 2025-03-25T11:15:12.000Z (over 1 year ago)
• Last Synced: 2025-03-25T12:25:59.085Z (over 1 year ago)
• Language: Jupyter Notebook
• Homepage:
• Size: 79.2 MB
• Stars: 85
• Watchers: 5
• Forks: 7
• Open Issues: 17
• Metadata Files:
  • Readme: README.md
  • Changelog: CHANGELOG.md
  • Contributing: docs/contributing.md
  • License: LICENSE

Awesome Lists containing this project

• awesome-ai-for-science - Nicheformer - Foundation model jointly trained on single-cell and spatial transcriptomics data, enabling unified representation learning across cellular and tissue spatial contexts for cell type prediction, spatial domain inference, and cross-modal integration (theislab, bioRxiv 2024, 164+ stars) (🔬 Domain-Specific Applications / 🧬 Biology & Medicine)
• awesome-computational-biology - Nicheformer - cell and spatial omics using a transformer architecture with positional embeddings to encode spatial cell information. (Machine Learning Tasks and Models / Foundation Models)