https://github.com/theislab/perturbation-metrics
https://github.com/theislab/perturbation-metrics
Last synced: 10 months ago
JSON representation
- Host: GitHub
- URL: https://github.com/theislab/perturbation-metrics
- Owner: theislab
- License: bsd-3-clause
- Created: 2023-03-23T16:43:30.000Z (over 3 years ago)
- Default Branch: main
- Last Pushed: 2025-08-10T22:23:44.000Z (12 months ago)
- Last Synced: 2025-08-11T00:20:03.180Z (12 months ago)
- Language: Jupyter Notebook
- Size: 127 MB
- Stars: 5
- Watchers: 2
- Forks: 0
- Open Issues: 1
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# perturbation-metrics
To setup an appropriate python environment, simply install [pertpy](https://pertpy.readthedocs.io/en/latest/installation.html). This will also install other required packages such as `scanpy` and `scvi-tools`.
```
pip install pertpy
```
Simulations were run in `R`. To set up an appropriate R environment, please install the following in an R 4.0+ environment.
```
BiocManager::install("splatter")
BiocManager::install("scater")
```