https://github.com/theislab/scanalysistutorial
https://github.com/theislab/scanalysistutorial
Last synced: 5 months ago
JSON representation
- Host: GitHub
- URL: https://github.com/theislab/scanalysistutorial
- Owner: theislab
- Created: 2016-12-14T07:44:27.000Z (over 9 years ago)
- Default Branch: master
- Last Pushed: 2016-12-14T08:26:57.000Z (over 9 years ago)
- Last Synced: 2026-01-15T00:52:43.554Z (6 months ago)
- Language: Jupyter Notebook
- Size: 15.8 MB
- Stars: 10
- Watchers: 1
- Forks: 3
- Open Issues: 0
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Metadata Files:
- Readme: README.md
Awesome Lists containing this project
README
single-cell analysis tutorial
=============================
This project shows a basic approach to analyse single-cell RNA-sequencing data.
We included the comparison of different dimension reduction techniques and pseudotemporal ordering of the data using *diffusion pseudotime*.
We provide the tutorial as *iPython Notebook*: If you use the *jupyter* software, you may download the *ipynb* file directly and run the tutorial on your local machine. In addition, there is the plain R file of the tutorial that contains all commands displayed in the iPython notebook.