https://github.com/thibaultlatrille/dbcnet

Graph of links between DBC groups
https://github.com/thibaultlatrille/dbcnet

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Graph of links between DBC groups

• Host: GitHub
• URL: https://github.com/thibaultlatrille/dbcnet
• Owner: ThibaultLatrille
• Created: 2024-04-23T07:04:25.000Z (5 months ago)
• Default Branch: main
• Last Pushed: 2024-05-23T09:15:10.000Z (4 months ago)
• Last Synced: 2024-05-23T10:30:12.357Z (4 months ago)
• Language: HTML
• Homepage: https://thibaultlatrille.github.io/DBCNet/
• Size: 265 KB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# DBCNet

### This code repository:

https://tinyurl.com/DBCNet2024

### The collaborative spreadsheet:

https://docs.google.com/spreadsheets/d/1YzLqlKZBrjSAjGZ1VwzpoAemwn04uZNlmVhsGsmBPuk/edit#gid=0

- Sheet `LINKS` contains the links between manuscripts, this is where we will collaboratively build the network.

- Sheet `Bergamnn`, `Ciriello`, `Dessimoz`, `Fasshauer`, `Kutalik`, `Malaspinas` and `Salamin` already contains the list of manuscripts (you can add a row if you want).

### The graph of the network:

https://thibaultlatrille.github.io/DBCNet/

## Done:

- Nodes are already defined and grouped (by PI, thanks to *volunteers*).

- PDFs are already downloaded (in the `PDF` column of each sheet).

- Links within groups are already defined (based on abstract similarity).

- Convert the spreadsheet into a graph (using Python/networkx).

- Display the graph on a webpage (using [d3.js](https://d3js.org/), thanks to [Clément Train](https://github.com/F4llis)).

## To do:

- Create links between groups in the spreadsheet (`LINKS`), this is the goal of the workshop.

## How to contribute

- Add rows in the sheet `LINKS` as links between manuscripts.

- Write your name in the first column (so that other people know who is working on each line).

- Use the `Manuscript ID` (e.g. `B_pathway`) to refer to a manuscript in the spreadsheet.

- Write the reason for the link in the `Relationship` column, this can be because the manuscript shares a similar topic, a similar method, dataset, or whatever you think is relevant.

- Write any comment in the `Comment` column if you wish too (optional).

- It is possible to have several rows for the same pair of manuscripts (reasons will be concatenated).

- If you are part of joint lab-meeting, seek link both inside and outside of these joint meetings.

- As many as you can, the more links the better!