https://github.com/tiagoantao/virtual-core

A data science core based on Docker containers
https://github.com/tiagoantao/virtual-core

data-science docker

Last synced: 4 months ago
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A data science core based on Docker containers

• Host: GitHub
• URL: https://github.com/tiagoantao/virtual-core
• Owner: tiagoantao
• License: agpl-3.0
• Created: 2016-02-17T00:34:52.000Z (over 10 years ago)
• Default Branch: master
• Last Pushed: 2019-07-02T04:01:29.000Z (about 7 years ago)
• Last Synced: 2025-06-28T02:05:47.883Z (about 1 year ago)
• Topics: data-science, docker
• Language: Python
• Homepage:
• Size: 463 KB
• Stars: 6
• Watchers: 4
• Forks: 4
• Open Issues: 47
• Metadata Files:
  • Readme: README.rst
  • License: LICENSE

Awesome Lists containing this project

README

          
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A Data Science core based on Docker containers

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Warning

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virtual-core isn't maintained anymore!

Summary

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Here you can find a set of containers to help creating a data science core architecture, for example:

- LDAP server

- PostgreSQL server

- NFS server (Not active)

- Samba server (for integration with sequencer technology like Illumina)

- Galaxy server

- Zabbix server

- Software server (i.e. a lot of pre-installed software)

- Interative Compute server (a place for users to login)

- Exploratory Analysis server (JupyterHub with JupyterLab)

- SLURM grid configuration

There is a focus on bioinformatics, but the infrastructure can be used for

other applications.

Installation

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Please check the `project documentation`_.

Acknowledgements

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The sequencer Samba file configuration was originally inspired on David Personette's `Samba container`_.

It is currently completely different.

The current Galaxy configuration is based on Björn Grüning's `Galaxy container`_.

Author and License

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Copyright by Tiago Antao. Licensed under GNU Affero General Public License

version 3.

.. _project documentation: http://virtual-core.rtfd.io/

.. _Galaxy container: https://github.com/bgruening/docker-galaxy-stable

.. _Samba container: https://github.com/dperson/samba