https://github.com/timcadman/armadillo-illustration

Workshop for genetics meeting
https://github.com/timcadman/armadillo-illustration

Last synced: about 2 months ago
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Workshop for genetics meeting

• Host: GitHub
• URL: https://github.com/timcadman/armadillo-illustration
• Owner: timcadman
• Created: 2024-03-04T14:29:35.000Z (10 months ago)
• Default Branch: master
• Last Pushed: 2024-03-07T09:01:40.000Z (10 months ago)
• Last Synced: 2024-03-07T11:31:44.315Z (10 months ago)
• Language: R
• Homepage:
• Size: 12.7 KB
• Stars: 0
• Watchers: 2
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# Molgenis Armadillo Demo

This is a demo to illustrate how to use [Molgenis Armadillo](https://github.com/molgenis/molgenis-service-armadillo).

## Prerequisites

- You've been granted access to the `armadillo-illustration` project on the demo server

## How to

1. Go to the [Central Analysis Server](https://lifecycle.analysis.molgenis.org/)

2. Select Login with MOLGENIS and login using your institute account

3. Select R studio

4. Run the following:

``` R

url <- "https://raw.githubusercontent.com/timcadman/armadillo-illustration/master/workshop.Rmd"

file_path <- "/home/jovyan/"

download.file(url, paste(file_path, "workshop.Rmd", sep = ""), mode = "wb")

forest_url <- "https://raw.githubusercontent.com/timcadman/armadillo-illustration/master/forest_theme.R"

download.file(forest_url, paste(file_path, "forest_theme.R", sep = ""), mode = "wb")

# This one will take a while required for https://github.com/molgenis/molgenis-service-armadillo/issues/679

install.packages("arrow")

```

5. Select the "files" tab on the right of your R studio, if it's not opened yet

6. Make sure you're in the home folder (you might have to go a folder up)

7. Open workshop.Rmd

8. Follow the workshop in that file