https://github.com/timeu/docker-pygwas
Docker image for the pygwas library
https://github.com/timeu/docker-pygwas
Last synced: 6 months ago
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Docker image for the pygwas library
- Host: GitHub
- URL: https://github.com/timeu/docker-pygwas
- Owner: timeu
- Created: 2016-04-26T13:18:43.000Z (about 10 years ago)
- Default Branch: master
- Last Pushed: 2016-06-01T12:12:46.000Z (about 10 years ago)
- Last Synced: 2025-02-17T14:13:30.742Z (over 1 year ago)
- Size: 1.95 KB
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
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README
# timeu/pygwas
[`timeu/pygwas`](https://index.docker.io/u/timeu/pygwas) is a [docker](https://docker.io) image that is based on [`timeu/gwas_base`](https://registry.hub.docker.com/u/timeu/gwas_base/) docker image and contains the [PyGWAS](https://github.com/timeu/PyGWAS) library.
## Usage
To see the possible options:
```
docker run timeu/pygwas
```
Example run:
```
docker run -v /HOST_FOLDER:/DATA timeu/pygwas run -a amm -g 1 -f /DATA/GENOTYPE/ -o /DATA/output.hdf5 /DATA/phenotype.csv
```