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https://github.com/tlnagy/fluorescenceexclusion.jl
Analyzing Fluorescence Exclusion Microscopy images with Julia
https://github.com/tlnagy/fluorescenceexclusion.jl
fluorescence-exclusion-microscopy image-analysis julia
Last synced: about 3 hours ago
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Analyzing Fluorescence Exclusion Microscopy images with Julia
- Host: GitHub
- URL: https://github.com/tlnagy/fluorescenceexclusion.jl
- Owner: tlnagy
- Created: 2020-02-06T02:45:00.000Z (almost 5 years ago)
- Default Branch: master
- Last Pushed: 2023-02-04T00:19:05.000Z (almost 2 years ago)
- Last Synced: 2024-10-12T14:54:47.576Z (about 1 month ago)
- Topics: fluorescence-exclusion-microscopy, image-analysis, julia
- Language: Julia
- Homepage:
- Size: 2.96 MB
- Stars: 0
- Watchers: 3
- Forks: 0
- Open Issues: 5
-
Metadata Files:
- Readme: README.md
Awesome Lists containing this project
README
# FluorescenceExclusion.jl
| **Documentation** | **Build Status** |
|:----------------------------------|:--------------------------------------------------------------|
| [![][docs-dev-img]][docs-dev-url] | [![][status-img]][status-url] [![][ci-img]][ci-url] [![][codecov-img]][codecov-url] |
Fluorescence Exclusion Microscopy is a quantitative imaging method for measuring
cell volume that relies on the exclusion of a dye by cells in chambers with a
known height. This is a Julia implementation inspired by the "1.4 Data Analysis"
section in Cadart et al.
[¹]: Cadart, C., Zlotek-Zlotkiewicz, E., Venkova, L., Thouvenin, O., Racine, V.,
Le Berre, M., Monnier, S., & Piel, M. (2017). Chapter 6 - Fluorescence eXclusion
Measurement of volume in live cells. In Thomas Lecuit (Ed.), Methods in Cell
Biology (Vol. 139, pp. 103–120). Academic Press.
http://www.sciencedirect.com/science/article/pii/S0091679X16301613
## Installation
Until this package is registered in the General repository, the easiest way to install the latest stable version is
to add https://github.com/tlnagy/TNRegistry as follows:
```julia
using Pkg
pkg"registry add [email protected]:tlnagy/TNRegistry.git"
```
Then installation is as easy as
```julia
using Pkg
Pkg.add("FluorescenceExclusion")
```
[docs-dev-img]: https://img.shields.io/badge/docs-dev-blue.svg
[docs-dev-url]: https://tamasnagy.com/FluorescenceExclusion.jl/dev
[ci-img]: https://github.com/tlnagy/FluorescenceExclusion.jl/workflows/CI/badge.svg
[ci-url]: https://github.com/tlnagy/FluorescenceExclusion.jl/actions
[codecov-img]: https://codecov.io/gh/tlnagy/FluorescenceExclusion.jl/branch/master/graph/badge.svg
[codecov-url]: https://codecov.io/gh/tlnagy/FluorescenceExclusion.jl
[status-img]: https://www.repostatus.org/badges/latest/wip.svg
[status-url]: https://www.repostatus.org/#wip