https://github.com/toelt-llc/symbrain_siamese

https://github.com/toelt-llc/symbrain_siamese

Last synced: about 1 month ago
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• Host: GitHub
• URL: https://github.com/toelt-llc/symbrain_siamese
• Owner: toelt-llc
• Created: 2025-01-10T09:59:51.000Z (about 1 month ago)
• Default Branch: main
• Last Pushed: 2025-01-10T10:29:26.000Z (about 1 month ago)
• Last Synced: 2025-01-10T11:20:13.962Z (about 1 month ago)
• Language: Jupyter Notebook
• Size: 605 KB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# MRI image analysis

This repository contains siamese model research applications on image analysis methods for 2D MRIs. 

## Status 

**Writing-phase**  

:hourglass_flowing_sand:

### TODO steps 

- [x] List of preprocessing methods applied and available as examples

- [x] Siamese network code

- [x] Siamese backbones in the training loop

- [x] Data processing and tf/torch compatible

- [x] Evaluation dataset

- [x] Documented steps of processing and methods

- [x] Noise simulation code clean

- [x] Evaluation of results and recap (wandb available)

- [ ] Args check, GPU selection check

## How to navigate the repository

- [code](): in this folder you will find all the code used for the analysis and the figure(s) creation.

    - [code/0_data_load]() notebook containing the data pre-processing commands and step-by-step illustrations.

    - [code/1_data_save]() notebook containing the basic local data save code.

    - [code/siamese_torch]() contains the latest pytorch siamese network version, with its complete training process.

todos