https://github.com/tomkellygenetics/r-heatmap-functions

Modifications to the R function heatmap.2 {gplots}
https://github.com/tomkellygenetics/r-heatmap-functions

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Modifications to the R function heatmap.2 {gplots}

• Host: GitHub
• URL: https://github.com/tomkellygenetics/r-heatmap-functions
• Owner: TomKellyGenetics
• License: gpl-2.0
• Created: 2014-08-05T05:01:21.000Z (almost 12 years ago)
• Default Branch: master
• Last Pushed: 2016-02-12T01:32:55.000Z (over 10 years ago)
• Last Synced: 2024-03-19T21:52:02.175Z (about 2 years ago)
• Language: R
• Size: 36.1 KB
• Stars: 1
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
R-Heatmap-Functions

===================

Altered by Mik Black and Tom Kelly at the University of Otago

Modifications to the R function `heatmap.2 {gplots}`

requires R packages `gplots` and `gtools`

`heatmap.mik`: enable multiple colorbars for _ColSideColors_ with `rbind`, rownames are labels

`heatmap.mik2`: enable multiple colorbars for _ColSideColors_ with `rbind`, rownames are labels, and enable multiple colorbars for _RowSideColors_ with `cbind`, colnames are labels

`heatmap.mik.mod`: `heatmap.mik` with column reordering supressed if a dendrogram is given for Colv, allows manual reordering of input matrix, dendrogram, and _ColSideColors_ for custom dendrograms

`heatmap.mik.mod2`: functionality of `heatmap.mik2` with supression of column reordering as above

`heatmap.mik.mod2x`: functionality of `heatmap.mik2` with supression of column (and row) reordering as above

`heatmap.mik.tk`: `heatmap.mik` (multiple colour bars enabled) with label editing restored from `heatmap.2`

`heatmap.mik.tk2`: `heatmap.mik2` (multiple and row colour bars enabled) with label editing restored from `heatmap.2`

`heatmap.mik.tk3`: `heatmap.mik2` (multiple and row colour bars enabled) with label editing restored from `heatmap.2` and adjusting width of color bars with colbarsize (relative to default of 1).

Citation: Gregory R. Warnes, Ben Bolker, Lodewijk Bonebakker, Robert Gentleman,

  Wolfgang Huber Andy Liaw, Thomas Lumley, Martin Maechler, Arni

  Magnusson, Steffen Moeller, Marc Schwartz and Bill Venables (2015).

  gplots: Various R Programming Tools for Plotting Data. R package

  version 2.17.0. http://CRAN.R-project.org/package=gplots